Changes from the flat namespace to heirarchical one.  Instead of writing:
	#include "minidriver.h"
the following form should be used.
	#include <jtag/minidriver.h>
The exception is from .c files in the same directory.
 #endif
 
 #include <jtag/interface.h>
-#include "minidriver.h"
+#include <jtag/minidriver.h>
 #include <helper/command.h>
 
 struct jtag_callback_entry
 
 #endif
 
 #include "embeddedice.h"
-#include "minidriver.h"
+#include <jtag/minidriver.h>
 #include <jtag/interface.h>
 
 struct jtag_interface minidummy_interface =
 
 #endif
 
 #include "embeddedice.h"
-#include "minidriver.h"
+#include <jtag/minidriver.h>
 #include <jtag/interface.h>
 #include "zy1000_version.h"